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NF-kappaB Signaling

Written/Edited by Dr. Stefan Pellenz, PhD

NF-kB (nuclear factor kappa-light-chain-enhancer of activated B cells) represent a group of homo- or heterodimeric transcription factors that are central in a network of various signal transduction pathways. A vast array of signals such as cytokines, growth factors and hormones, infections, oxidative stress, certain drugs, and chemical substances are transmitted to the NF-kB complexes and passed on to influence processes ranging from cell survival, apoptosis, and proliferation to immune response and inflammation. They are therefore highly pleiotropic, i.e. they influence a multitude of phenotypic trait.

NF-kB is a homo- or heterodimeric complex formed in mammals by the Rel homology domain (RHD)-containing proteins RelA/p65, RelB, c-Rel, NFKB1/p105/p50, and NFKB2/p100/p52. The heterodimeric RELA/p50 complex of the canonical pathway appears to be the most abundant one. All NF-kB proteins have an N-terminal RHD which plays an essential role in DNA binding, as dimerization interface and for the binding to IkB inhibitors. NF-kB proteins do however differ in their C-terminal: class I proteins RELA, RELB and c-Rel contain are characterized by a trans-activator domain whereas class II proteins NFKB1/p105/p50 and NFKB2/p100/p52 have ankyrin repeat transrepression domain.

In the canonical pathway, NF-kappaB are kept in an inactive state in the cytoplasm through interaction with inhibitory IkB proteins. Upon stimulation of the NF-kB signaling by one of the abovementioned stimuli these regulators are phosphorylated by an IKK kinase complex composed of protein kinases IKK-alpha, IKK-beta, and IKBKG(NEMO). The phosphorylation marks the IkB inhibitors for proteasomal degradation, thus setting NF-kB free. Once freed, NF-kB are further activated by post-translational modification and translocated to the nucleus where it interacts with specific kB elements . Depending on the cell type and nature of the received stimulus the non-canonical pathway can be engaged. The core regulator for this pathway is NF-kB inducing kinase (NIK/MAP3K14) which activates IKK-alpha, thus leading to phosphorylation of p100. p100 is then processed to p52 leading to the activation and nuclear translocation of the p52/RelB NF-kB dimer. The canonical pathway does not depend on protein synthesis and responds rapidly to numerous stimuli for a wide variety of downstream effects. In contrast, the non-canonical pathway is slow and persistent and responds only to a subset of signals for more specific effects.

NF-kappaB Signaling is deeply intertwined with several pathways such as MAPK signaling and the p53 pathway. Addtionally there is significant crosstalk between NF-kB signaling and autophagy, with both pathways sharing common regulatory mechanisms that influence cellular responses such as inflammation, cell survival, and tumor progression. Autophagic activity can regulate NF-kB activation by controlling the degradation of signaling intermediates, while NF-kB itself modulates autophagy-related genes, thereby integrating cellular stress responses. Additionally, NF-kB signaling is tightly linked to the regulation of neuroinflammation, playing a critical role in mediating immune responses within the central nervous system. Furthermore, interactions between NF-kB signaling and gut microbiota have been observed, where bacterial infections influence NF-kB activity and contribute to gastrointestinal inflammatory responses and tumorigenesis. These interconnected regulatory networks underscore the extensive role of NF-kB beyond immune signaling, integrating metabolic, inflammatory, and cellular homeostasis mechanisms.

Related Pathways and Resources


References:

  1. Hoesel, Schmid: "The complexity of NF-κB signaling in inflammation and cancer." in: Molecular cancer, Vol. 12, pp. 86, (2013) (PubMed).
  2. Oeckinghaus, Hayden, Ghosh: "Crosstalk in NF-κB signaling pathways." in: Nature immunology, Vol. 12, Issue 8, pp. 695-708, (2011) (PubMed).
  3. Oeckinghaus, Ghosh: "The NF-kappaB family of transcription factors and its regulation." in: Cold Spring Harbor perspectives in biology, Vol. 1, Issue 4, pp. a000034, (2010) (PubMed).
  4. Israël: "The IKK complex, a central regulator of NF-kappaB activation." in: Cold Spring Harbor perspectives in biology, Vol. 2, Issue 3, pp. a000158, (2010) (PubMed).
  5. King, Sastri, Chang, Pennypacker, Taylor: "The rate of NF-κB nuclear translocation is regulated by PKA and A kinase interacting protein 1." in: PloS one, Vol. 6, Issue 4, pp. e18713, (2011) (PubMed).
  6. Sun: "Non-canonical NF-κB signaling pathway." in: Cell research, Vol. 21, Issue 1, pp. 71-85, (2011) (PubMed).
  7. Trocoli, Djavaheri-Mergny: "The complex interplay between autophagy and NF-κB signaling pathways in cancer cells." in: American journal of cancer research, Vol. 1, Issue 5, pp. 629-49, (2011) (PubMed).
  8. Peng, Ouyang, Lu, Li: "The NF-κB Signaling Pathway, the Microbiota, and Gastrointestinal Tumorigenesis: Recent Advances." in: Frontiers in immunology, Vol. 11, pp. 1387, (2021) (PubMed).
  9. Shih, Wang, Yang: "NF-kappaB Signaling Pathways in Neurological Inflammation: A Mini Review." in: Frontiers in molecular neuroscience, Vol. 8, pp. 77, (2016) (PubMed).

Adaptors

Cytokines

Enzymes

TRAF1 (TNF Receptor-Associated Factor 1):

TRAF2 (TNF Receptor-Associated Factor 2):

TRAF3 (TNF Receptor-Associated Factor 3):

TRAF5 (TNF Receptor-Associated Factor 5):

TRAF6 (TNF Receptor-Associated Factor 6):

Growth factors

Inhibitors

NFKBIE (Nuclear Factor of kappa Light Polypeptide Gene Enhancer in B-Cells Inhibitor, epsilon):

NFKBIZ (Nuclear Factor of kappa Light Polypeptide Gene Enhancer in B-Cells Inhibitor, zeta):

Kinases

IRAK1 (Interleukin-1 Receptor-Associated Kinase 1):

RIPK1 (Receptor (TNFRSF)-Interacting serine-threonine Kinase 1):

IRAK4 (Interleukin-1 Receptor-Associated Kinase 4):

MAP3K7 (Mitogen-Activated Protein Kinase Kinase Kinase 7):

Protein kinases

IKBKG (Inhibitor of kappa Light Polypeptide Gene Enhancer in B-Cells, Kinase gamma):

IKBKB (Inhibitor of kappa Light Polypeptide Gene Enhancer in B-Cells, Kinase beta):

MAP3K14 (Mitogen-Activated Protein Kinase Kinase Kinase 14):

Receptors

EGFR (Epidermal Growth Factor Receptor):

TNFRSF1A (Tumor Necrosis Factor Receptor Superfamily, Member 1A):

IL1RAP (Interleukin 1 Receptor Accessory Protein):

IL1R2 (Interleukin 1 Receptor, Type II):

LTBR (Lymphotoxin beta Receptor (TNFR Superfamily, Member 3)):

NGFR (Nerve Growth Factor Receptor):

TNFRSF11A (Tumor Necrosis Factor Receptor Superfamily, Member 11a, NFKB Activator):

TNFRSF13C (Tumor Necrosis Factor Receptor Superfamily, Member 13C):

TNFRSF1B (Tumor Necrosis Factor Receptor Superfamily, Member 1B):

Transcription factors

NFKB1 (Nuclear Factor of kappa Light Polypeptide Gene Enhancer in B-Cells 1):

RELB (V-Rel Reticuloendotheliosis Viral Oncogene Homolog B):

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